Skip to content

Quick Start

Installation

You can install napari-relax via [pip]:

pip install napari-relax

If napari is not already installed, you can install napari-relax with napari and Qt via:

pip install "napari-relax[all]"

To install latest development version :

pip install git+https://github.com/guignardlab/napari-relax.git

Import a dataset into the viewer

To import a new dataset can drag and drop any supported format, like TGMM, MaMuT, Mastodon or ASTEC and .lT files, into napari or select it with the open file pop up window into the Viewer.

There are also 2 demo datasets easily accessible from File>Open Sample>demo LineageTree dataset. Other datasets will also be available in [citation].

  • The first demo dataset contains 3 descendants of Er lineage of Parhyale hawaiensis across the first 100 timepoints of their development.
  • While the other contains a C. elegans embryo starting from P0 with gene expressions from multiple experiments (from other datasets) imported. positional data, gene expression data

demo_dataset

Go to Starting page
Go to Tutorials